splitcode

Introduction:

  • Getting started
  • Example

Contents:

  • User guide: Tags
  • User guide: Extraction
  • Extracting from read names
  • Random sequence insertion
  • Nesting config files
  • Header and SAM tags
  • Streaming and Interleaving
  • Demultiplexing
  • Remultiplexing
  • Reference guide
  • Frequently asked questions

Tutorials:

  • Put technical sequences into separate files
  • Demultiplex single-cells into individual files
  • Deduplication by barcode
  • Separating Smart-seq3 reads
  • SPLiT-seq processing
  • SPRITE barcodes
  • inDrops guide

Additional Features:

  • Lift
  • BAM output
  • Unmasking
splitcode
  • Search

© Copyright 2025, Delaney K. Sullivan, Lior Pachter.

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