splitcode
Introduction:
Getting started
Example
Contents:
User guide: Tags
User guide: Extraction
Extracting from read names
Random sequence insertion
Nesting config files
Header and SAM tags
Streaming and Interleaving
Demultiplexing
Remultiplexing
Reference guide
Frequently asked questions
Tutorials:
Put technical sequences into separate files
Demultiplex single-cells into individual files
Deduplication by barcode
Separating Smart-seq3 reads
SPLiT-seq processing
SPRITE barcodes
inDrops guide
Additional Features:
Lift
BAM output
Unmasking
splitcode
Index
Index